miRBase entry: mtr-MIR2630m

Stem-loop mtr-MIR2630m


Accession
MI0011932
Description
Medicago truncatula mtr-MIR2630m precursor miRNA
Gene family
MIPF0000814; MIR2630

Literature search
2 open access papers mention mtr-MIR2630m
(2 sentences)

Sequence

uccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauuaaaauuggucccuauaauauucauuuuaguccucauuuugagggacuaaaaucaaauauucgacauauuacaaggaccaaauccaauaugaaucaauuuuacaaggacuaaaacaaaauaccaaggaccaaaaccaaauauucuauauuugcaaggac
((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((...((((((((....(((((((...(((((((((((((((((((((...))).)))))))))).........)).))))))...)))))))....))))))))...)))))))))))).)))))))))))))))))))))))))))))))))))))))))))).)))).

Structure
-    -                                            a            cau        aaaa       cua      -  ---------          -   u 
 uccu gcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauu    uuggucc   uaauau uc         auuuuagucc uca  
 |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||    |||||||   |||||| ||         |||||||||| ||| u
 agga cguuuauaucuuauaaaccaaaaccaggaaccauaaaacaaaau aggaacauuuua   aaguauaa    aaccagg   auuaua ag         uaaaaucagg agu  
c    a                                            c            acu        ccua       aac      c  cuuauaaac          g   u 


Annotation confidence Not enough data
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Genome context
chr5: 18370582-18370811 [-]

Database links

Mature mtr-miR2630m

Accession MIMAT0013385
Description Medicago truncatula mtr-miR2630m mature miRNA
Sequence 21 - UGGUUUUGGUCCUUGGUAUUU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796