miRBase entry: mtr-MIR2630e

Stem-loop mtr-MIR2630e


Accession
MI0011924
Description
Medicago truncatula mtr-MIR2630e precursor miRNA
Gene family
MIPF0000814; MIR2630

Literature search
2 open access papers mention mtr-MIR2630e
(2 sentences)

Sequence

cccugcaaauauauaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauuggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaggaccaaauccaauauaaaucaauuuuacaaggauuaaaacaaaauaccaaggaccaaaaccaaauuuuuuauauuugcaagga
((.((((((((((.((.((((((((((((((((((((((((((((((((((((((((((((.((((.((((((...(((((((...((((((..(((((((((((........)))))))))))............))))))...)))))))...))))))))))..)))))))))))))))))))))))))))))))))))))))))))).)).)))))))))).)).

Structure
-  c          u  u                                            -c    c      aaa       cua      ----------uc           cgu 
 cc ugcaaauaua aa auuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaau  auuu auauug   uuggucc   uaauau            auuuuaguccu   u
 || |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||   |||||||   ||||||            |||||||||||    
 gg acguuuauau uu uaaaccaaaaccaggaaccauaaaacaaaauuaggaacauuuua  uaaa uauaac   aaccagg   auuaua            uaaaaucaggg   u
a  a          u  u                                            ac    -      cua       aac      caucuuauaaac           agu 


Annotation confidence Not enough data
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Genome context
chr3: 37979010-37979238 [-]

Database links

Mature mtr-miR2630e

Accession MIMAT0013377
Description Medicago truncatula mtr-miR2630e mature miRNA
Sequence 21 - UGGUUUUGGUCCUUGGUAUUU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796