Stem-loop sequence mtr-MIR2630e

Accession

MI0011924 (change log)

Description

Medicago truncatula miR2630e stem-loop

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630e
(2 sentences)

Stem-loop

   -  c          u  u                                            -c    c      aaa       cua      ----------uc           cgu 
5'  cc ugcaaauaua aa auuugguuuugguccuugguauuuuguuuuaauccuuguaaaau  auuu auauug   uuggucc   uaauau            auuuuaguccu   u
    || |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||   |||||||   ||||||            |||||||||||    
3'  gg acguuuauau uu uaaaccaaaaccaggaaccauaaaacaaaauuaggaacauuuua  uaaa uauaac   aaccagg   auuaua            uaaaaucaggg   u
   a  a          u  u                                            ac    -      cua       aac      caucuuauaaac           agu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 37979010-37979238 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011924

Mature sequence mtr-miR2630e

• Accession: MIMAT0013377
• Sequence: 21 - ugguuuugguccuugguauuu - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).