Stem-loop sequence mtr-MIR2630d

Accession

MI0011923 (change log)

Description

Medicago truncatula miR2630d stem-loop

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630d
(2 sentences)

Stem-loop

   -  aua           u                               a           ucau         aaa       cua      ----------uc          -  a 
5'  cc   caaauauagaa auuugguuuugguccuugguauuuuguuuua ucuuuguaaaa    uucauauug   uuggucc   uaauau            auuuuagucc uc u
    ||   ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    |||||||||   |||||||   ||||||            |||||||||| || u
3'  gg   guuuauaucuu uaaaccaaaaccaggaaccauaaaacaaaau aggaacauuuu    aaguauaac   aaccagg   auuaua            uaaaaucagg ag u
   a  aac           u                               c           cacu         cua       aac      caucuuauaaac          g  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 23128153-23128381 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011923

Mature sequence mtr-miR2630d

• Accession: MIMAT0013376
• Sequence: 21 - ugguuuugguccuugguauuu - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).