Stem-loop sequence mtr-MIR2630x

Accession

MI0011921 (change log)

Description

Medicago truncatula miR2630x stem-loop

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630x
(2 sentences)

Stem-loop

   c            aaaaaa                            a               a           u                guagaauauu g          c  a 
5'  ccugcaaauaua      uugguuuugguccuugguauuuuguuuu guccuuguaaaauug uucauauugga uuggucuuuguaauau          u auuuuagucc uc a
    ||||||||||||      |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||          | |||||||||| || a
3'  ggacguuuauau      aaccaaaaccaggaaccauaaaacaaaa uaggaacauuuuagu aaguauaacuu aaccagggauauuaua          a uaaaaucagg ag a
   a            cuuaua                            c               a           u                ---------- g          -  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr1: 27586224-27586451 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011921

Mature sequence mtr-miR2630x

• Accession: MIMAT0013374
• Sequence: 21 - ugguuuugguccuugguauuu - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).