Stem-loop mtr-MIR2630w

Accession

MI0011920

Description

Medicago truncatula mtr-MIR2630w precursor miRNA

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630w
(2 sentences)

Sequence

acugcaaauauaaaaaauuuUGGUUUUGGUCCUUGGUAUUUuguuuuaguccuuguaaaauagauucauauuggauuuggucuuuguaauagguagaauauuugauuuuagucccucaaaacgaggacuaaaaugaauauuauagggaccaauuucaauaugaaaugauuuuacaaagauuaaaacaaaauaccaaggaccaaaaccaaauauucuuuauuugaaugga
....((((((........(((((((((((((((((((((((((((((((((.(((((((((...(((((((((((.(((((((((((((((..........((.((((((((((.((.....)))))))))))).))))))))))))))))).)))))))))))...))))))))).))))))))))))))))))))))))))))))))).......))))))......

Structure

--acug      uaaaaaau                                 c         aga           u               gguagaauau  g          c  a 
      caaaua        uuUGGUUUUGGUCCUUGGUAUUUuguuuuaguc uuguaaaau   uucauauugga uuggucuuuguaaua          uu auuuuagucc uc a
      ||||||        ||||||||||||||||||||||||||||||||| |||||||||   ||||||||||| |||||||||||||||          || |||||||||| || a
      guuuau        aaaccaaaaccaggaaccauaaaacaaaauuag aacauuuua   aaguauaacuu aaccagggauauuau          aa uaaaaucagg ag a
agguaa      -uucuuau                                 a         gua           u               ----------  g          -  c 

Annotation confidence Not enough data

Genome context

chr1: 23684222-23684450 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2630w

Mature mtr-miR2630w

• Accession: MIMAT0013373
• Description: Medicago truncatula mtr-miR2630w mature miRNA
• Sequence: 21 - UGGUUUUGGUCCUUGGUAUUU - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796