miRBase entry: mtr-MIR2630b

Stem-loop mtr-MIR2630b


Accession
MI0011918
Description
Medicago truncatula mtr-MIR2630b precursor miRNA
Gene family
MIPF0000814; MIR2630

Literature search
2 open access papers mention mtr-MIR2630b
(2 sentences)

Sequence

cucugcaaauauaaaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaaauggucccuauaauauucauuuuaguccucguuuugagggacuaaaaucaaauauucuacauauuacaaggacaaaauccaauaugaaucaauuuuacaaggacuaaaauaaaauaccaaggaccaaaaccaaauuuuuuauauuuacagaga
(((((.((((((((((.(((((((((((((((((((((((((((((((.((((((((((((...(((((((((......((((...((((((..(((((((((((........)))))))))))............))))))...))))......)))))))))...)))))))))))).))))))))))))))))))))))))))))))).)))))))))).))))).

Structure
-     c          u                               a            cau         aaaaug    cua      ----------uc           cgu 
 cucug aaauauaaaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauug      gucc   uaauau            auuuuaguccu   u
 ||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||      ||||   ||||||            |||||||||||    
 gagac uuuauauuuu uaaaccaaaaccaggaaccauaaaauaaaau aggaacauuuua   aaguauaac      cagg   auuaua            uaaaaucaggg   u
a     a          u                               c            acu         cuaaaa    aac      caucuuauaaac           agu 


Annotation confidence Not enough data
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Genome context
chr1: 552478-552706 [-]

Database links

Mature mtr-miR2630b

Accession MIMAT0013371
Description Medicago truncatula mtr-miR2630b mature miRNA
Sequence 21 - UGGUUUUGGUCCUUGGUAUUU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796