miRBase entry: mtr-MIR2111j

Stem-loop mtr-MIR2111j


Accession
MI0011907
Description
Medicago truncatula mtr-MIR2111j precursor miRNA
Gene family
MIPF0000754; MIR2111

Literature search
2 open access papers mention mtr-MIR2111j
(8 sentences)

Sequence

uuauuggguaaggauuagaUAAUCUGCAUCCUGAGGUUUAuaacaauauuuuagcugucuuuaaccuuagaaugcagauuauccuuuccuuauugccaaugc
.(((((((((((((...((((((((((((.((((((((.(..(((..........)))..).)))))))).))))))))))))...)))))))..)))))).

Structure
u      --       uua            C        U ua   auau 
 uauugg  guaagga   gaUAAUCUGCAU CUGAGGUU A  aca    u
 ||||||  |||||||   |||||||||||| |||||||| |  |||     
 guaacc  uauuccu   cuauuagacgua gauuccaa u  ugu    u
c      gu       uuc            a        u uc   cgau 


Annotation confidence Not enough data
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Genome context
chr7: 16649192-16649293 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from mtr-MIR2111j
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2111j

Accession MIMAT0013360
Description Medicago truncatula mtr-miR2111j mature miRNA
Sequence 20 - UAAUCUGCAUCCUGAGGUUUA - 40
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796