miRBase entry: mtr-MIR2592k

Stem-loop mtr-MIR2592k


Accession
MI0011899
Description
Medicago truncatula mtr-MIR2592k precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592k
(2 sentences)

Sequence

gagauaauucaaaccugcaaaacaacaggacucaaacauuucgccaaacaccucauguuuucccuuugaaaauaauaaauuuuugugaggcuugcuuuagaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaaaaauuuaauauuuucaaaggagaaacaugaggugcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauuaccu
.((.((((((((((.((..((((((((((((((((.((((((((.((.(((((((((((((.((((((((((((.(((((((((((...(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).)))...))))))))))).)))))))))))).))))))))))))).)))))))))).))))))))))))))))..)).)))))))))).))

Structure
g  a          c  ca                a        c  a             c            a           gag   u c         u      c     c  cc  a    g 
 ag uaauucaaac ug  aaacaacaggacucaa cauuucgc aa caccucauguuuu ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug ca  ga uuga  
 || |||||||||| ||  |||||||||||||||| |||||||| || ||||||||||||| |||||||||||| |||||||||||   ||| | ||||||||| |||||| ||||| ||  || |||| g
 uc auuaaguuug ac  uUUGUUGUCCUGAGUU GUAAAgcg uu guggaguacaaag ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac gu  cu aacu  
-  c          a  ag                C        -  c             a            a           aua   c -         u      -     a  uc  -    u 


Annotation confidence Not enough data
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Genome context
chr6: 16339495-16339750 [-]

Database links

Mature mtr-miR2592k

Accession MIMAT0013352
Description Medicago truncatula mtr-miR2592k mature miRNA
Sequence 217 - AAAUGCUUGAGUCCUGUUGUU - 237
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796