Stem-loop mtr-MIR2592a

Accession

MI0011896

Description

Medicago truncatula mtr-MIR2592a precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592a
(2 sentences)

Sequence

agauaaauucaaaccugccaaacaacaugagucacgcauuucgCCCGGCAUUCAUGUUUUCCUuugaaaagaauaaauuuuuguuaggugugcuuuagauaaugguauucaauugccaaugaaaugagguucauuccuugacacuuaauaccuucaucuaaaccaaccuaacaagaauuuaguauuuucaaagGAAAAACAUGAAUGUCGAGCGAAAUGCUUGAGUCCUGUUGUUuggcagguuugaauuuauc
.((((((((((((((((((((((((((.((.(((.(((((((((.(((((((((((((((((((((((((...((((((((((((((((.((.(((((((...((((((.((.((.(((.(((.(((...)))))).))).)).))))))))...))))))).))))))))))))))))))...)))))))))).))))))))))))))).))))))))).))).)).))))))))))))))))))))))))))

Structure

a                          u  g   c         C               -          gaa                g  c       aau      c  u  c   u   a   g 
 gauaaauucaaaccugccaaacaaca ga uca gcauuucgC CGGCAUUCAUGUUUU CCUuugaaaa   uaaauuuuuguuaggu ug uuuagau   gguauu aa ug caa gaa uga  
 |||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||||| ||||||||||   |||||||||||||||| || |||||||   |||||| || || ||| ||| ||| g
 cuauuuaaguuuggacgguUUGUUGU CU AGU CGUAAAGCG GCUGUAAGUACAAAA Ggaaacuuuu   auuuaagaacaaucca ac aaaucua   ccauaa uu ac guu cuu acu  
-                          C  G   U         A               A          aug                -  c       cuu      -  c  a   c   -   u 

Annotation confidence Not enough data

Genome context

chr1: 28276324-28276577 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592a

Mature mtr-miR2592a.2-3p

• Accession: MIMAT0013349
• Description: Medicago truncatula mtr-miR2592a.2-3p mature miRNA
• Sequence: 215 - AAAUGCUUGAGUCCUGUUGUU - 235
• Evidence: experimental ; 454 [1]

Mature mtr-miR2592a-5p

• Accession: MIMAT0020945
• Description: Medicago truncatula mtr-miR2592a-5p mature miRNA
• Sequence: 44 - CCCGGCAUUCAUGUUUUCCU - 63
• Evidence: experimental ; Illumina [2]

Mature mtr-miR2592a-3p

• Accession: MIMAT0020946
• Description: Medicago truncatula mtr-miR2592a-3p mature miRNA
• Sequence: 194 - GAAAAACAUGAAUGUCGAGCG - 214
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


2. PubMed ID: 21762498
   Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing
   Wang T, Chen L, Zhao M, Tian Q, Zhang WH
   BMC Genomics (2011) 12:367