Stem-loop mtr-MIR2626

Accession

MI0011894

Description

Medicago truncatula mtr-MIR2626 precursor miRNA

Sequence

acuuauuauuaaauaaaaacAACGUCGGGAUUUAGGGUGUUauaaguuguguugaacuggguuaacaaacucuauguguuuuuuacuuuccugccuuuuauuuuuuuguuuuguuuaugcuuacugcuagcgugauguuggaacuuuaaauggaacauaugcugucugugcaucugaaauugaaacaucacauagaacaacuucuaauuaacacgcuaaaauucaacauccguuauauuugccuugaucuguc
((..((((.((((((..(((...((.(((.(((((.((((((.((((((((((((......)))))....((((((((..(((((.((((.....((((((((....((((((.(((((((.......)))))))...))))))...))))))))...((((.......))))..)))).)))))...))))))))))))))).....)))))).))))).))).))....))).))))))...))))..)).

Structure

-  uu    --u      aa   -AAC  C   A     G      ----u       guugaacuggguuaacaaac        -uu     c    ---------------cugcc        uuuu      --u       ua 
 ac  auua   uaaaua  aac    GU GGG UUUAG GUGUUa     aaguugu                    ucuaugug   uuuua uuuc                    uuuuauuu    guuuug   uuaugcu  c
 ||  ||||   ||||||  |||    || ||| ||||| ||||||     |||||||                    ||||||||   ||||| ||||                    ||||||||    ||||||   |||||||  u
 ug  uagu   guuuau  uug    ca cuu aaauc cacaau     uucaaca                    agauacac   aaagu aaag                    aagguaaa    caaggu   agugcga  g
c  uc    ucc      -a   ccua  a   a     g      uaauc       --------------------        uac     u    ucuacgugucugucguauac        -uuu      ugu       uc 

Annotation confidence Not enough data

Genome context

chr2: 20180560-20180812 [+]

Mature mtr-miR2626

• Accession: MIMAT0013347
• Description: Medicago truncatula mtr-miR2626 mature miRNA
• Sequence: 21 - AACGUCGGGAUUUAGGGUGUU - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796