miRBase entry: mtr-MIR2619a

Stem-loop mtr-MIR2619a


Accession
MI0011886
Description
Medicago truncatula mtr-MIR2619a precursor miRNA
Gene family
MIPF0001294; MIR2619

Literature search
1 open access papers mention mtr-MIR2619a
(1 sentences)

Sequence

agcccccuaacuaauuaaaauacaaaacaauccccuauguauuggaucuuugacaguuuuagcucccaagaccacuuuugauuuagucuuuguugacguggcacccacaauggucgaaacgugauaccucgcuuaagggaugugggugccacgucagcgaagauuaagucaaaagugguuuuggaggccaaaacugccaaagauccaauACAUAGGAGGCUGUUUUGUAUuuuaauuuguuaggauguc
.((..((((((.(((((((((((((((((..(((((((((((((((((((((.(((((((.(((.((((((((((((((((((((((((((((((((((((((((((((....((..((.((((....))))))..))..)))))))))))))))))))))))))))))))))))))))))))).))).))))))).))))))))))))))))))).)).))))))))))))))))).))))))..)).

Structure
a  cc      u                 au  -                   a       a   c                                            augg  ga  c    u 
 gc  ccuaac aauuaaaauacaaaaca  cc ccuauguauuggaucuuug caguuuu gcu ccaagaccacuuuugauuuagucuuuguugacguggcacccaca    uc  aa guga a
 ||  |||||| |||||||||||||||||  || ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    ||  || ||||  
 ug  ggauug uuaauuuUAUGUUUUGU  GG GGAUACAuaaccuagaaac gucaaaa cgg gguuuuggugaaaacugaauuagaagcgacugcaccgugggugu    gg  uu cgcu c
c  ua      u                 -C  A                   c       c   a                                            --ag  aa  -    c 


Annotation confidence Not enough data
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Genome context
chr8: 20630374-20630622 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2619a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2619a

Accession MIMAT0013339
Description Medicago truncatula mtr-miR2619a mature miRNA
Sequence 210 - ACAUAGGAGGCUGUUUUGUAU - 230
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796