miRBase entry: mtr-MIR2618b

Stem-loop mtr-MIR2618b


Accession
MI0011885
Description
Medicago truncatula mtr-MIR2618b precursor miRNA
Gene family
MIPF0001016; MIR2618


Sequence

agcauguaccauguacgaauuuggguugcauucugacuagguaucucuuucaaauuauacguaaauauauuuaaaagagauacguauguauauaagagguuagugugaauuuaauuuacuuauguuuaaucuagguuaauguaaauuuaauuuacuuaugaacaauuuagauuaauguaaauucaauuuacuuauguucaauuuaaguuaauguaaauuaaguuaacauauguauauaagagguuaguGUGAAUUCAGUUUACGUACGUUcaaucuagguuaaugua
.((((..((((((((((((.(((((((.(((.((((((..((((((((((.(((((((......))).)))).)))))))))).((((((((((.(((..(((.(((((((.(((((((......((((((((((((...((((((...))))))........)))))))))))).))))))).))))))))))..)))...((((.(((((....))))).))))..))))))))))...)))))).)))))))))).)).)))))))........)))..)))).

Structure
a    gu   --------       -  u       g   u      agguaucucuuucaaauuauacguaaauauauuuaaaagagauacg          ----------------------------a   gu   u       u       uuaugu            -----aau      u 
 gcau  acc        auguacg aa uuggguu cau cugacu                                              uauguauaua                             gag  uag gugaauu aauuuac      uuaaucuagguu        guaaau  
 ||||  |||        ||||||| || ||||||| ||| ||||||                                              ||||||||||                             |||  ||| ||||||| |||||||      ||||||||||||        |||||| u
 ugua  ugg        UGCAUGC UU GACUUAA GUG gauugg                                              auauauguau                             cuu  auu cauuuaa uuaaaug      aauuagauuuaa        cauuua  
a    au   aucuaacU       A  U       -   u      -------------------------------------------aga          acaauugaauuaaauguaauugaauuuaa   gu   -       c       -----u            caaguauu      a 


Annotation confidence Not enough data
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Genome context
chr7: 28342357-28342643 [-]

Database links

Mature mtr-miR2618b

Accession MIMAT0013338
Description Medicago truncatula mtr-miR2618b mature miRNA
Sequence 249 - GUGAAUUCAGUUUACGUACGUU - 270
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796