miRBase entry: mtr-MIR2617c

Stem-loop mtr-MIR2617c


Accession
MI0011882
Description
Medicago truncatula mtr-MIR2617c precursor miRNA
Gene family
MIPF0000907; MIR2617


Sequence

cuauuuaagaaauuuugaaaUGUAGUGUAGCAUGCCCGUUugugaauuacugaugaauauuuuauauuuaauuacuuuuggguaacgggguguuacauuugauggacaacuuaaguau
.((((((((.....(((..((..((((((((((.(((((((.((((.......(((((((...)))))))......)))).).))))))))))))))))..))...))))))))))).

Structure
c        aaauu   -aa  GU          G      - g    uuacuga       u 
 uauuuaag     uug   aU  AGUGUAGCAU CCCGUU u ugaa       ugaauau  
 ||||||||     |||   ||  |||||||||| |||||| | ||||       ||||||| u
 augaauuc     aac   ua  uuacauugug gggcaa g guuu       auuuaua  
u        -----   agg  gu          -      u g    -ucauua       u 


Annotation confidence Not enough data
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Genome context
chr3: 9118230-9118347 [+]

Database links

Mature mtr-miR2617c

Accession MIMAT0013335
Description Medicago truncatula mtr-miR2617c mature miRNA
Sequence 21 - UGUAGUGUAGCAUGCCCGUU - 40
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796