miRBase entry: mtr-MIR2614

Stem-loop mtr-MIR2614


Accession
MI0011875
Description
Medicago truncatula mtr-MIR2614 precursor miRNA


Sequence

uggaaaugaguggagucgaaccgaaccugucugagcucggcucgacuagauaagaauuuguucggcucaaaacucgacucgaguucgacacgaacuuuuuuucagcucgaauucgacuuguuuaaaguucacgaauaguuCGGUUCGACUCGUUAGGUUCa
((((..(((...((((((((((((((.((((.((((((((.((((((.(((((....))))).))........)))).)))))))))))).(((((((....(((.(((....))).)))...))))))).......)))))))))))))).)))..))))

Structure
    aa   gug              ----------------------------------------------c    u        c    --------  a     g 
ugga  uga   gagucgaaccgaac                                               uguc gagcucgg ucga        cu gauaa a
||||  |||   ||||||||||||||                                               |||| |||||||| ||||        || |||||  
aCUU  AUU   CUCAGCUUGGCuug                                               acag cuugagcu agcu        gg uuguu a
    GG   --G              auaagcacuugaaauuuguucagcuuaagcucgacuuuuuuucaagc    -        c    caaaacuc  c     u 


Annotation confidence Not enough data
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Genome context
chr3: 27920429-27920589 [-]

Database links

Mature mtr-miR2614

Accession MIMAT0013328
Description Medicago truncatula mtr-miR2614 mature miRNA
Sequence 141 - CGGUUCGACUCGUUAGGUUC - 160
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796