Stem-loop mtr-MIR2604

Accession

MI0011855

Description

Medicago truncatula mtr-MIR2604 precursor miRNA

Gene family

MIPF0001276; MIR5267

Sequence

guuugcuagaacacauccacUAAUUUUUAUGUGGGAGUGUUuuagcaaagcuauaacuuagaguguauuuaaccacuguuuaguuauuuauuugcuaaaauacuccuucuaaaaaauaaguggguguauucuagcaaaugccuauaagauuugcuagaacacacccacuuguuuuuuuagaaaguguguuauagcaacauacaccuuaagguguauuuauuaauuuuuuaguuauaacuugcuaaaacacucccacauaaaaacuaguggguguguucuagaaaauu
((((.(((((((((((((((((.(((((((((((((((((((((((((.(.(((((((.((((((((..((((.........))))..)))((((((.(((((.(.(((((((((((((((((((((.(((((((((((.........))))))))))).))))))))))).)))))))))).).))))).)))))).(((((((....)))))))......)))))..))))))).)))))))))))))))))))))))))).))))))))))))))))).)))).

Structure

-    g                 A                         a c       -u     guauuuaaccacuguuuaguuauuuau      a     u c          -           a           gcc 
 guuu cuagaacacauccacUA UUUUUAUGUGGGAGUGUUuuagcaa g uauaacu  agagu                           uugcua aauac c uucuaaaaaa uaagugggugu uucuagcaaau   u
 |||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||  |||||                           |||||| ||||| | |||||||||| ||||||||||| |||||||||||   a
 uaaa gaucuugugugggugau aaaaauacacccucacaaaaucguu c auauuga  uuuua                           aacgau uugug g aagauuuuuu guucacccaca aagaucguuua   u
u    a                 c                         - a       uu     --auuauuuauguggaauuccacauac      a     u a          u           c           gaa 

Annotation confidence Not enough data

Genome context

chr6: 5273845-5274131 [+]

Mature mtr-miR2604

• Accession: MIMAT0013308
• Description: Medicago truncatula mtr-miR2604 mature miRNA
• Sequence: 21 - UAAUUUUUAUGUGGGAGUGUU - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796