miRBase entry: mtr-MIR2602a

Stem-loop mtr-MIR2602a


Accession
MI0011852
Description
Medicago truncatula mtr-MIR2602a precursor miRNA
Gene family
MIPF0000820; MIR2585


Sequence

acugccacaucacuaauucgaugacguggcaaucacuaccacacaugaaauuccaauuuagcccuuaagaagaggacaaaauauugaagaaagaauuggaaacccagggguaaaauuagaauuucauguaUGGCAGUGAUUGCCACGUCAUcaaauuagugacauagcag
.((((....(((((((((.((((((((((((((((((.(((.(((((((((((.(((((.(((((...........(((....)))..........(((....)))))))).))))).))))))))))).))).)))))))))))))))))).)))))))))....))))

Structure
a    caca         c                  a   c           c     a     ---------uaagaagagga   a 
 cugc    ucacuaauu gaugacguggcaaucacu cca acaugaaauuc aauuu gcccu                    caa a
 ||||    ||||||||| |||||||||||||||||| ||| ||||||||||| ||||| |||||                    |||  
 gacg    agugauuaa cUACUGCACCGUUAGUGA GGU uguacuuuaag uuaaa ugggg                    guu u
-    auac         a                  C   a           a     a     acccaaagguuaagaaagaa   a 


Annotation confidence Not enough data
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Genome context
chr5: 13768425-13768594 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2602a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2602a

Accession MIMAT0013305
Description Medicago truncatula mtr-miR2602a mature miRNA
Sequence 131 - UGGCAGUGAUUGCCACGUCAU - 151
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796