Stem-loop sequence mtr-MIR2111n

Accession

MI0011846 (change log)

Description

Medicago truncatula miR2111n stem-loop

Gene family

MIPF0000754; MIR2111

Literature search

2 open access papers mention mtr-MIR2111n
(8 sentences)

Stem-loop

   uauau       ---   ug            uc ug       -    aaua    c       ccccu 
5'      uggguga   gga  ggauaaucugca  c  agguuua aaac    guua guaauua     a
        |||||||   |||  ||||||||||||  |  ||||||| ||||    |||| |||||||     a
3'      auccacu   ccu  ucuauuagacgu  g  uccgaau uuug    uaau cauugau     a
   --cgu       auu   uu            ga gu       c    ---c    a       uaaaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 16637529-16637662 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2111n

• mtr-MIR2111k: chr7: 16644233-16644366 [-]
• mtr-MIR2111l: chr7: 16644069-16644155 [-]
• mtr-MIR2111m: chr7: 16637685-16637791 [-]
• mtr-MIR2111n: chr7: 16637529-16637662 [-]

Database links

• miRBase Tracker:MI0011846

Mature sequence mtr-miR2111n

• Accession: MIMAT0013299
• Sequence: 21 - uaaucugcauccugagguuua - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).