Stem-loop mtr-MIR2111g

Accession

MI0011841

Description

Medicago truncatula mtr-MIR2111g precursor miRNA

Gene family

MIPF0000754; MIR2111

Literature search

2 open access papers mention mtr-MIR2111g
(8 sentences)

Sequence

auauugggugaggaugggaUAAUCUGCAUCCUGAGGUUUAagacaauauuugcguaauuuccaaaaaauaaauaaauugcguaaucguuucuaAGCCUCGGAGUGCGGAUUAUCuuuuccuaucaccaaugc
.(((((((..((((.((((((((((((((.((((((((((.((.(((..(((((((((((.............)))))))))))..))))))))))))))).)))))))))))))).))))..).)))))).

Structure

a      - ug    u              C          a  c   au           ccaaa 
 uauugg g  agga gggaUAAUCUGCAU CUGAGGUUUA ga aau  uugcguaauuu     a
 |||||| |  |||| |||||||||||||| |||||||||| || |||  |||||||||||     a
 guaacc c  uccu uuCUAUUAGGCGUG GGCUCCGAau cu uug  aaugcguuaaa     a
c      a ua    u              A          -  -   cu           uaaau 

Annotation confidence Not enough data

Genome context

Unknown

Mature mtr-miR2111g-5p

• Accession: MIMAT0013294
• Description: Medicago truncatula mtr-miR2111g-5p mature miRNA
• Sequence: 20 - UAAUCUGCAUCCUGAGGUUUA - 40
• Evidence: experimental ; 454 [1]

Mature mtr-miR2111g-3p

• Accession: MIMAT0013288
• Description: Medicago truncatula mtr-miR2111g-3p mature miRNA
• Sequence: 94 - AGCCUCGGAGUGCGGAUUAUC - 114
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796