miRBase entry: mtr-MIR2111c

Stem-loop mtr-MIR2111c


Accession
MI0011836
Description
Medicago truncatula mtr-MIR2111c precursor miRNA
Gene family
MIPF0000754; MIR2111

Literature search
2 open access papers mention mtr-MIR2111c
(8 sentences)

Sequence

agauugggaucagaugagaUAAUCUGCAUCCUGAGGUUUAgaacaaucgaugcguaacuguaucuaagccuuagaaugcagauuaucucuuccuuaucaccaaugca
..((((((((..((.((((((((((((((.(((((((((((((((.............))).)))))))))))).)))))))))))))).))...))).)))))...

Structure
-ag     -   -ca  u              C            -   aucga 
   auugg gau   ga gagaUAAUCUGCAU CUGAGGUUUAga aca     u
   ||||| |||   || |||||||||||||| |||||||||||| |||     g
   uaacc cua   cu cucuauuagacgua gauuccgaaucu ugu     c
acg     a   uuc  u              a            a   caaug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr7: 16686087-16686193 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from mtr-MIR2111c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2111c

Accession MIMAT0013289
Description Medicago truncatula mtr-miR2111c mature miRNA
Sequence 20 - UAAUCUGCAUCCUGAGGUUUA - 40
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796