Stem-loop mtr-MIR2592j

Accession

MI0011821

Description

Medicago truncatula mtr-MIR2592j precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592j
(2 sentences)

Sequence

aaauucaaaccugcaaaacaacaggacucaagcauuucgccaaacaccucauguuuucccuuuaaaaauaauaaauuuuugugaggcuugcuuuagaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaaaaauuuaauauuuucaaaggagaaacaugaggugcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauua
.(((((((((.((..(((((((((((((((((((((((((.((.(((((((((((((.(((((.((((((.(((((((((((...(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).)))...))))))))))).)))))).))))).))))))))))))).)))))))))))))))))))))))))))..)).))))))))).

Structure

a         c  ca                         c  a             c     a      a           gag   u c         u      c     c  cc  a    g 
 aauucaaac ug  aaacaacaggacucaagcauuucgc aa caccucauguuuu ccuuu aaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug ca  ga uuga  
 ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||| ||||| |||||| |||||||||||   ||| | ||||||||| |||||| ||||| ||  || |||| g
 uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaag ggaaa uuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac gu  cu aacu  
a         a  ag                         -  c             a     c      a           aua   c -         u      -     a  uc  -    u 

Annotation confidence Not enough data

Genome context

chr5: 18620902-18621150 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from mtr-MIR2592j

Mature mtr-miR2592j

• Accession: MIMAT0013274
• Description: Medicago truncatula mtr-miR2592j mature miRNA
• Sequence: 213 - AAAUGCUUGAGUCCUGUUGUU - 233
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796