Stem-loop sequence mtr-MIR2590f

Accession

MI0011813 (change log)

Description

Medicago truncatula miR2590f stem-loop

Gene family

MIPF0000834; MIR2590

Literature search

1 open access papers mention mtr-MIR2590f
(1 sentences)

Stem-loop

   aaaau                  g          c          ucaagaaauagucuugaaauuaauguuagccaauaaaaucucagccgaaaau 
5'      uuuaagaaugacauggca aauaaucacc uuagauuuua                                                    c
        |||||||||||||||||| |||||||||| ||||||||||                                                    a
3'      aaguucuuacuguaccgu uuauuagugg aaucuaaagu                                                    u
   uuuau                  g          a          cagaguaaauaauuagaaaguauuuuuuuuuuauguauugugggugguggga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): AC199470.3: 30990-31186 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011813

Mature sequence mtr-miR2590f

• Accession: MIMAT0013266
• Sequence: 157 - aucuaaaggugauuauugugcc - 178
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).