miRBase entry: mtr-MIR2590f

Stem-loop mtr-MIR2590f


Accession
MI0011813
Description
Medicago truncatula mtr-MIR2590f precursor miRNA
Gene family
MIPF0000834; MIR2590

Literature search
1 open access papers mention mtr-MIR2590f
(1 sentences)

Sequence

aaaauuuuaagaaugacauggcagaauaaucacccuuagauuuuaucaagaaauagucuugaaauuaauguuagccaauaaaaucucagccgaaaaucauagggugguggguguuauguauuuuuuuuuuaugaaagauuaauaaaugagacugaaAUCUAAAGGUGAUUAUUGUGCCaugucauucuugaauauuu
.....((((((((((((((((((.((((((((((.((((((((((((((((.....))))))............(((........(((.((..........)).))))))((.((((.((((..(((((....)))))..)))).)))).)))))))))))).)))))))))).)))))))))))))))))).....

Structure
aaaau                  g          c          ucaagaaauagucuugaaauuaauguuagccaauaaaaucucagccgaaaaucauaggguggugg  g    g    uu     u 
     uuuaagaaugacauggca aauaaucacc uuagauuuua                                                                 gu uuau uauu  uuuuu a
     |||||||||||||||||| |||||||||| ||||||||||                                                                 || |||| ||||  |||||  
     aaguucuuacuguaCCGU UUAUUAGUGG AAUCUAaagu                                                                 ca agua auaa  agaaa u
uuuau                  G          A          -----------------------------------------------------------------  g    a    uu     g 


Annotation confidence Not enough data
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Genome context
AC199470.3: 30990-31186 [-]

Database links

Mature mtr-miR2590f

Accession MIMAT0013266
Description Medicago truncatula mtr-miR2590f mature miRNA
Sequence 157 - AUCUAAAGGUGAUUAUUGUGCC - 178
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796