miRBase entry: mtr-MIR2590d

Stem-loop mtr-MIR2590d


Accession
MI0011811
Description
Medicago truncatula mtr-MIR2590d precursor miRNA
Gene family
MIPF0000834; MIR2590

Literature search
1 open access papers mention mtr-MIR2590d
(1 sentences)

Sequence

caagaaaauuucaagaaugacauggcagaauaaucacccuuagauuuuaucaagaaauagucuugaaacuaauguuagccaauaaaaucucagccuggucggaaaucaugggugguggguguuauguauuuuuuuuuaugaaagauuaauaaaugagacugaaAUCUAAAGGUGAUUAUUGUGCCaugucauucuugaaucuuu
.((((....((((((((((((((((((.((((((((((.((((((((((((((((.....))))))(((....)))..(((........(((.((((((.....)))).)).))))))((.((((.((((..(((((...)))))..)))).)))).)))))))))))).)))))))))).)))))))))))))))))))))).

Structure
c    aaau                  g          c          ucaagaaauagucuugaaacuaauguuagccaauaaaaucucagccuggucggaaaucauggguggugg  g    g    uu     a 
 aaga    uucaagaaugacauggca aauaaucacc uuagauuuua                                                                     gu uuau uauu  uuuuu  
 ||||    |||||||||||||||||| |||||||||| ||||||||||                                                                     || |||| ||||  ||||| u
 uucu    aaguucuuacuguaCCGU UUAUUAGUGG AAUCUAaagu                                                                     ca agua auaa  agaaa  
u    ----                  G          A          ---------------------------------------------------------------------  g    a    uu     g 


Annotation confidence Not enough data
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Genome context
chr5: 7888321-7888524 [+]

Database links

Mature mtr-miR2590d

Accession MIMAT0013264
Description Medicago truncatula mtr-miR2590d mature miRNA
Sequence 164 - AUCUAAAGGUGAUUAUUGUGCC - 185
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796