miRBase entry: mtr-MIR2590c

Stem-loop mtr-MIR2590c


Accession
MI0011810
Description
Medicago truncatula mtr-MIR2590c precursor miRNA
Gene family
MIPF0000834; MIR2590

Literature search
1 open access papers mention mtr-MIR2590c
(1 sentences)

Sequence

aaaauuuuaagaaugacauggcagaauaaucacccuuaaauuuuaucaauaaauagucuugaaauuaauguuagccaauaaaaucucagucuagccggaaaucauggggugguggguguuauguauuuuuuauuuaugaaagauuaauaaaugagacugaaAUCUAAAGGUGAUUAUUGUGCCauuucauucuugaauauuu
.....(((((((((((.((((((.((((((((((.(((.(((((((((.....((((((((((((..(((.((.(((.....((((((................))))))..))).)).)))..)))))..........))))))).....)))...)))))).))).)))))))))).)))))).))))))))))).....

Structure
aaaau           c      g          c   a      ---   auaaa       ----------     ua   u  g   auaaa      gucuagc 
     uuuaagaauga auggca aauaaucacc uua auuuua   uca     uagucuu          gaaau  aug ua cca     aucuca       c
     ||||||||||| |||||| |||||||||| ||| ||||||   |||     |||||||          |||||  ||| || |||     ||||||        
     aaguucuuacu uaCCGU UUAUUAGUGG AAU UAaagu   agu     auuagaa          uuuua  uau gu ggu     uggggu       g
uuuau           u      G          A   C      cag   aaaua       aguauuuauu     ug   u  g   ---gg      acuaaag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 36310085-36310286 [-]

Database links

Mature mtr-miR2590c

Accession MIMAT0013263
Description Medicago truncatula mtr-miR2590c mature miRNA
Sequence 162 - AUCUAAAGGUGAUUAUUGUGCC - 183
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796