miRBase entry: mtr-MIR2590b

Stem-loop mtr-MIR2590b


Accession
MI0011809
Description
Medicago truncatula mtr-MIR2590b precursor miRNA
Gene family
MIPF0000834; MIR2590

Literature search
1 open access papers mention mtr-MIR2590b
(1 sentences)

Sequence

agaaaauuucaagaaugacauggcagaauaaucacccuuaaauuuuaucaagaaauauucaugaaauuaauguuaaccaauaaaaucucagccugaccggaaaucauggggugguggguguuauguaucuuuuuuuaugaaagauuaauaaaugagacugaaAUCUAAAGGUGAUUAUUGUGCCaugucauucuugaauuuuu
..((((.((((((((((((((((((.((((((((((.(((.(((((((((.(((...))).))).....................(((((((((.((((............)))))))).((((..(((((((.....)))))))..)))).))))).)))))).))).)))))))))).)))))))))))))))))).))))

Structure
ag    u                  g          c   a      ucaagaaauauucaugaaauuaauguuaaccaauaaaa     gccugaccggaaaucaugggguggugggug    gu       u 
  aaaa uucaagaaugacauggca aauaaucacc uua auuuua                                      ucuca                              uuau  aucuuuu u
  |||| |||||||||||||||||| |||||||||| ||| ||||||                                      |||||                              ||||  ||||||| u
  uuuu aaguucuuacuguaCCGU UUAUUAGUGG AAU UAaagu                                      agagu                              aaua  uagaaag a
--    u                  G          A   C      -------------------------------------c     -----------------------------a    au       u 


Annotation confidence Not enough data
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Genome context
chr4: 31149740-31149942 [+]

Database links

Mature mtr-miR2590b

Accession MIMAT0013262
Description Medicago truncatula mtr-miR2590b mature miRNA
Sequence 163 - AUCUAAAGGUGAUUAUUGUGCC - 184
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796