miRBase entry: mtr-MIR2587c

Stem-loop mtr-MIR2587c


Accession
MI0011801
Description
Medicago truncatula mtr-MIR2587c precursor miRNA
Gene family
MIPF0000835; MIR2587


Sequence

cgauggugucauggucauugUUGACCGUUCAUAUGAACCCUGcaauugcaaugcauuuuaacuugugugggguucauauaacggucaauagagacccuugacauaaaaga
.....((((((.((((.((((((((((((.((((((((((((((..(((...)))..........)))))))))))))))))))))))))).))))..))))))......

Structure
-cgaug      -u    a            C              --------au   a 
      guguca  gguc uugUUGACCGUU AUAUGAACCCUGca          ugc  
      ||||||  |||| |||||||||||| ||||||||||||||          ||| a
      uacagu  ccag gauaacuggcaa uauacuuggggugu          acg  
agaaaa      uc    a            -              guucaauuuu   u 


Annotation confidence Not enough data
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Genome context
chr7: 26671125-26671234 [+]

Database links

Mature mtr-miR2587c

Accession MIMAT0013254
Description Medicago truncatula mtr-miR2587c mature miRNA
Sequence 21 - UUGACCGUUCAUAUGAACCCUG - 42
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796