miRBase entry: mtr-MIR169k

Stem-loop mtr-MIR169k


Accession
MI0011795
Description
Medicago truncatula mtr-MIR169k precursor miRNA
Gene family
MIPF0001058; MIR169_6

Literature search
12 open access papers mention mtr-MIR169k
(49 sentences)

Sequence

gaagguagagagaguggauuUGAGCCAGGAUGGCUUGCCGGcaugcauuuuaggguguugcuagcgggccaucuugucucacauuugcuaucuuuccucu
..(((.(((((.(((((((.((((.(((((((((((((.((((.(((((....))))))))).))))))))))))).)))).))))))).))))))))..

Structure
ga   u     g       u    C             C    u     u 
  agg agaga aguggau UGAG CAGGAUGGCUUGC GGca gcauu u
  ||| ||||| ||||||| |||| ||||||||||||| |||| |||||  
  ucc uuucu ucguuua acuc guucuaccgggcg ucgu ugugg a
uc   -     a       c    u             a    -     g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mtr-miR169k

Accession MIMAT0013248
Description Medicago truncatula mtr-miR169k mature miRNA
Sequence 21 - UGAGCCAGGAUGGCUUGCCGG - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796