miRBase entry: dsi-mir-2582b

Stem-loop dsi-mir-2582b


Accession
MI0011790
Description
Drosophila simulans dsi-mir-2582b precursor miRNA
Gene family
MIPF0000870; mir-2582


Sequence

accauucauauccUGGAGAGUGUUCUUAAUAGUCUguuauuauuacacAAACUUUGGGAAUACUUUCGAGauaugaugg
.((((.((((((.(.((((((((((((((.(((.(((((....)).))).))))))))))))))))).)))))))))))

Structure
a    u      c G              U   C   -  u 
 ccau cauauc U GAGAGUGUUCUUAA AGU Ugu ua u
 |||| |||||| | |||||||||||||| ||| ||| ||  
 ggua guauaG A CUUUCAUAAGGGUU UCA Aca au a
-    -      - G              -   A   c  u 


Annotation confidence Not enough data
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Genome context
chrX: 3273790-3273868 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dsi-mir-2582b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-2582b-5p

Accession MIMAT0012523
Description Drosophila simulans dsi-miR-2582b-5p mature miRNA
Sequence 14 - UGGAGAGUGUUCUUAAUAGUCU - 35
Evidence experimental
Illumina [1-2]

Mature dsi-miR-2582b-3p

Accession MIMAT0012524
Description Drosophila simulans dsi-miR-2582b-3p mature miRNA
Sequence 49 - AAACUUUGGGAAUACUUUCGAG - 70
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250