miRBase entry: dsi-mir-975

Stem-loop dsi-mir-975


Accession
MI0011772
Description
Drosophila simulans dsi-mir-975 precursor miRNA
Gene family
MIPF0001038; mir-975


Sequence

ucggaagugcaauauugaguuuuugauuuUAAACACUGCCUACAUCCUGUAUguguuuugcauccgaUACAGUUGUAGGAGUCGUUUGCagucagagauuucacagacugcgaggaucga
((((...((((....(((((((((((((.((((((((.((((((..((((((((((...))))...)))))).))))))))).))))).))))))))).)))).....))))....))))

Structure
    -aag    -auau    -         u     -   G      UC      ---    u 
ucgg    ugca     ugag uuuuugauu UAAAC ACU CCUACA  CUGUAU   gugu  
||||    ||||     |||| ||||||||| ||||| ||| ||||||  ||||||   |||| u
agcu    gcgu     acuu agagacuga GUUUG UGA GGAUGU  GACAUa   uacg  
    agga    cagac    u         C     C   -      -U      gcc    u 


Annotation confidence Not enough data
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Genome context
chrX: 15018370-15018489 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dsi-mir-975
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-975-5p

Accession MIMAT0012501
Description Drosophila simulans dsi-miR-975-5p mature miRNA
Sequence 30 - UAAACACUGCCUACAUCCUGUAU - 52
Evidence experimental
Illumina [1-2]

Mature dsi-miR-975-3p

Accession MIMAT0037356
Description Drosophila simulans dsi-miR-975-3p mature miRNA
Sequence 68 - UACAGUUGUAGGAGUCGUUUGC - 89
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250