miRBase entry: dps-mir-2568b

Stem-loop dps-mir-2568b


Accession
MI0011718
Description
Drosophila pseudoobscura dps-mir-2568b precursor miRNA
Gene family
MIPF0001004; mir-2568


Sequence

gguuuuucgucgggaguuccaucgccGCAAACUUCCUCGGGUCAUGGcuguacuuuuucaaaaccccAUGGCCCGAGGAUGUUGCCUgugauccagcucaaaaucaaaacgaugugaaua
.((((..(((((.(((((..(((((.((((.(.((((((((((((((..((...........)).)))))))))))))).)))))..)))))..)))))..........))))).)))).

Structure
g    uu     ---------g     cc     -c    A U              cu  acuu 
 guuu  cgucg          gaguu  aucgc  GCAA C UCCUCGGGUCAUGG  gu    u
 ||||  |||||          |||||  |||||  |||| | ||||||||||||||  ||    u
 uaag  guagc          cucga  uagug  CGUU G AGGAGCCCGGUAcc  ca    u
a    -u     aaaacuaaaa     cc     UC    - U              -c  aaac 


Annotation confidence Not enough data
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Genome context
4_group5: 2251087-2251206 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dps-mir-2568b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2568b-5p

Accession MIMAT0012408
Description Drosophila pseudoobscura dps-miR-2568b-5p mature miRNA
Sequence 27 - GCAAACUUCCUCGGGUCAUGG - 47
Evidence experimental
Illumina [1]

Mature dps-miR-2568b-3p

Accession MIMAT0012409
Description Drosophila pseudoobscura dps-miR-2568b-3p mature miRNA
Sequence 68 - AUGGCCCGAGGAUGUUGCCU - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9