miRBase entry: dps-mir-2566a-1

Stem-loop dps-mir-2566a-1


Accession
MI0011710
Description
Drosophila pseudoobscura dps-mir-2566a-1 precursor miRNA
Gene family
MIPF0000880; mir-2566


Sequence

auuugcauuuggcUUUAGAAACACAAAGCAUGUGUgguauuuuaacucaUACAUAACUUGUGUCUCUUAGAUcaaaugugagua
((((((((((((((..(((.((((((...(((((((((......)).)))))))...)))))).))).)).)))))))))))).

Structure
-            -  UU   A      AGC       -  au 
 auuugcauuugg cU  AGA ACACAA   AUGUGUg gu  u
 |||||||||||| ||  ||| ||||||   ||||||| ||   
 ugaguguaaacU GA  UCU UGUGUU   UACAUac ca  u
a            A  -U   C      CAA       u  au 


Annotation confidence Not enough data
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Genome context
4_group4: 3552319-3552402 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from dps-mir-2566a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2566a-1-5p

Accession MIMAT0012394
Description Drosophila pseudoobscura dps-miR-2566a-1-5p mature miRNA
Sequence 14 - UUUAGAAACACAAAGCAUGUGU - 35
Evidence experimental
Illumina [1]

Mature dps-miR-2566a-3p

Accession MIMAT0012395
Description Drosophila pseudoobscura dps-miR-2566a-3p mature miRNA
Sequence 50 - UACAUAACUUGUGUCUCUUAGAU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9