miRBase entry: dps-mir-2558-1

Stem-loop dps-mir-2558-1


Accession
MI0011701
Description
Drosophila pseudoobscura dps-mir-2558-1 precursor miRNA
Gene family
MIPF0000817; mir-2558


Sequence

uaugguuagGUAGGUACCCAAAUAUCUUGAUuauaauuuuccuuuaggaacuuacaCAGAUAUUUCUGUACCUACAGgaauugu
.........((((((((..((((((((((....(((..((((....)))).))))).))))))))..)))))))).........

Structure
uaugguuag        CC        -  AUua   uu    u 
         GUAGGUAC  AAAUAUCU UG    uaa  uucc u
         ||||||||  |||||||| ||    |||  ||||  
         CAUCCAUG  UUUAUAGA ac    auu  aagg u
uguuaagGA        UC        C  ----   -c    a 


Annotation confidence Not enough data
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Genome context
4_group1: 2593451-2593534 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dps-mir-2558-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2558-5p

Accession MIMAT0012378
Description Drosophila pseudoobscura dps-miR-2558-5p mature miRNA
Sequence 10 - GUAGGUACCCAAAUAUCUUGAU - 31
Evidence experimental
Illumina [1]

Mature dps-miR-2558-3p

Accession MIMAT0012379
Description Drosophila pseudoobscura dps-miR-2558-3p mature miRNA
Sequence 57 - CAGAUAUUUCUGUACCUACAG - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9