Stem-loop dps-mir-2539

Accession

MI0011674

Description

Drosophila pseudoobscura dps-mir-2539 precursor miRNA

Sequence

cacuguuuuccccugauugacgguagugAAUGGUCAUGUUUCUGUAUUGguguauucgauauccAAUACAGCCGCAUGAUUAUUCAcaacuuugaucagcauauuaaagug
((((........((((((((.(((.((((((((((((((..((((((((((((.....))).)))))))))..)))))))))))))).)))))))))))........))))

Structure

    guuuuccc        c   a              UU         -   a 
cacu        cugauuga ggu gugAAUGGUCAUGU  CUGUAUUGg ugu u
||||        |||||||| ||| ||||||||||||||  ||||||||| ||| u
guga        gacuaguu uca cACUUAUUAGUACG  GACAUAAcc aua c
    aauuauac        -   a              CC         u   g 

Annotation confidence Not enough data

Genome context

XL_group1e: 8366678-8366788 [-]

Clustered miRNAs

13 other miRNAs are < 10 kb from dps-mir-2539

Mature dps-miR-2539-5p

• Accession: MIMAT0012334
• Description: Drosophila pseudoobscura dps-miR-2539-5p mature miRNA
• Sequence: 29 - AAUGGUCAUGUUUCUGUAUUG - 49
• Evidence: experimental ; Illumina [1]

Mature dps-miR-2539-3p

• Accession: MIMAT0012335
• Description: Drosophila pseudoobscura dps-miR-2539-3p mature miRNA
• Sequence: 65 - AAUACAGCCGCAUGAUUAUUCA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9