miRBase entry: dps-mir-2536

Stem-loop dps-mir-2536


Accession
MI0011670
Description
Drosophila pseudoobscura dps-mir-2536 precursor miRNA


Sequence

gugauuucuagagaagaacuggcagugcAAUACGUUUUUCUUCGCACUGAuguguguuuaaaccucAAUGCGUUGAAUAACGUUUUACagugugcguuucugagcaucgcc
((((((((.(((....(((..(((.((.((.(((((.(((..((((.(((.((........)).))).))))..))).))))).)).)).)))..))))))))).))))).

Structure
-     -   u   gaag   ug   g  c  U     U   UU    C   u  gug 
 gugau uuc aga    aac  gca ug AA ACGUU UUC  CGCA UGA gu   u
 ||||| ||| |||    |||  ||| || || ||||| |||  |||| ||| ||    
 cgcua gag ucu    uug  ugu aC UU UGCAA AAG  GCGU Acu ca   u
c     c   -   ----   cg   g  A  U     U   UU    A   c  aau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
XL_group1e: 8362342-8362452 [-]
Clustered miRNAs
10 other miRNAs are < 10 kb from dps-mir-2536
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2536-5p

Accession MIMAT0012326
Description Drosophila pseudoobscura dps-miR-2536-5p mature miRNA
Sequence 29 - AAUACGUUUUUCUUCGCACUGA - 50
Evidence experimental
Illumina [1]

Mature dps-miR-2536-3p

Accession MIMAT0012327
Description Drosophila pseudoobscura dps-miR-2536-3p mature miRNA
Sequence 67 - AAUGCGUUGAAUAACGUUUUAC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9