miRBase entry: dps-mir-1006

Stem-loop dps-mir-1006


Accession
MI0011608
Description
Drosophila pseudoobscura dps-mir-1006 precursor miRNA
Gene family
MIPF0000873; mir-1006


Sequence

gcgucaacuuucagGUGAGUUUGAAAUUGAAAUGUGUAAAuuguuugugccaauuUAAAUUCGAUUUCUUAUUCAUAGgugc
......((((....((((((..(((((((((.....(((((((.......)))))))..)))))))))..))))))))))..

Structure
gcguca    ucag      UU         AUGUG       uu 
      acuu    GUGAGU  GAAAUUGAA     UAAAuug  u
      ||||    ||||||  |||||||||     |||||||  g
      ugGA    UACUUA  CUUUAGCUU     AUuuaac  u
----cg    ----      UU         ---AA       cg 


Annotation confidence Not enough data
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Genome context
4_group3: 3057661-3057742 [+]

Database links

Mature dps-miR-1006-5p

Accession MIMAT0012251
Description Drosophila pseudoobscura dps-miR-1006-5p mature miRNA
Sequence 15 - GUGAGUUUGAAAUUGAAAUGUGUAAA - 40
Evidence experimental
Illumina [1]

Mature dps-miR-1006-3p

Accession MIMAT0012252
Description Drosophila pseudoobscura dps-miR-1006-3p mature miRNA
Sequence 56 - UAAAUUCGAUUUCUUAUUCAUAG - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9