miRBase entry: dps-mir-311

Stem-loop dps-mir-311


Accession
MI0011603
Description
Drosophila pseudoobscura dps-mir-311 precursor miRNA
Gene family
MIPF0000566; mir-310


Sequence

guguauucguguucgguggauaccuucAAGCUGGGGGAUGGGCAAUACUguguuguauuucaccagUAUUGCACACCCACUGGCCUGAaagugccuacugcuggguucaac
.((.(((((.((..(((((.(((.((((.((((((((.((.(((((((((((........)).))))))))).))))).))))).)))).))).)))))))))))).))..

Structure
-g  u     u  uc     a   c    A     -   A  G         -  uug 
  ug auucg gu  ggugg uac uucA GCUGG GGG UG GCAAUACUg ug   u
  || ||||| ||  ||||| ||| |||| ||||| ||| || ||||||||| ||    
  ac ugggu cg  ucauc gug aAGU CGGUC CCC AC CGUUAUgac ac   a
ca  u     -  --     c   a    C     A   -  A         c  uuu 


Annotation confidence Not enough data
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Genome context
3: 8679717-8679827 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from dps-mir-311
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-311-5p

Accession MIMAT0012241
Description Drosophila pseudoobscura dps-miR-311-5p mature miRNA
Sequence 28 - AAGCUGGGGGAUGGGCAAUACU - 49
Evidence experimental
Illumina [1]

Mature dps-miR-311-3p

Accession MIMAT0012242
Description Drosophila pseudoobscura dps-miR-311-3p mature miRNA
Sequence 67 - UAUUGCACACCCACUGGCCUGA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9