Stem-loop bdi-MIR171c

Accession

MI0011571

Description

Brachypodium distachyon bdi-MIR171c precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

1 open access papers mention bdi-MIR171c
(2 sentences)

Sequence

cgCGGUAUUGGUGCGGUUCAAUCagaaagcuggcgcuccggacgcaaaagggguuccucucuuUGAUUGAGCCGUGCCAAUAUCac
...(((((((((((((((((((((((.((..((.(((((..........))))).)).)).)))))))))))))))))))))))..

Structure

cgC                       a  cu  c     ggac 
   GGUAUUGGUGCGGUUCAAUCaga ag  gg gcucc    g
   ||||||||||||||||||||||| ||  || |||||     
   CUAUAACCGUGCCGAGUUAGUuu uc  cc ugggg    c
-ca                       c  -u  u     aaaa 

Annotation confidence Not enough data

Genome context

5: 24711141-24711226 [-]

Mature bdi-miR171c-3p

• Accession: MIMAT0012186
• Description: Brachypodium distachyon bdi-miR171c-3p mature miRNA
• Sequence: 64 - UGAUUGAGCCGUGCCAAUAUC - 84
• Evidence: experimental ; Illumina [2]

Mature bdi-miR171c-5p

• Accession: MIMAT0026923
• Description: Brachypodium distachyon bdi-miR171c-5p mature miRNA
• Sequence: 3 - CGGUAUUGGUGCGGUUCAAUC - 23
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19585143
   Conserved microRNAs and their targets in model grass species Brachypodium distachyon
   "Unver T, Budak H"
   "Planta (2009) 230:659-669


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443