Stem-loop bdi-MIR1122

Accession

MI0011568

Description

Brachypodium distachyon bdi-MIR1122 precursor miRNA

Gene family

MIPF0000382; MIR1122

Literature search

2 open access papers mention bdi-MIR1122
(5 sentences)

Sequence

ucguccauguauccauauuucauugccgaaauauuacauguguaucuagacguuuuuuacacaUAGAUACAUCCGUAUUUGGAcaaauuugagacgaguaauagagaucggauggaguacaauuuuuuccccuucuuaucuggucaccacauacacaaauuugcacagaacugaaccacg
.((((((((((...(((((((......)))))))))))))........))))...................((.((.((((..((((((((.(((.((....((((...(((.(((((...))))).)))..))))...)).)))..........))))))))..)))))).))......

Structure

ucguccauguauccauauuucauugccgaaauauuacauguguaucuagacguuuuuuacacaUAGAUACA  C  A    GA        ---------a   g  uaau    auc   u     a 
                                                                       UC GU UUUG  caaauuug          gac ag    agag   gga ggagu  
                                                                       || || ||||  ||||||||          ||| ||    ||||   ||| ||||| c
                                                                       ag ca agac  guuuaaac          cug uc    ucuu   ccu uuuua  
-----------------------------------------------------------------gcacca  u  -    ac        acauacacca   g  -uau    -cc   u     a 

Annotation confidence Not enough data

Genome context

5: 25218612-25218791 [-]

Mature bdi-miR1122

• Accession: MIMAT0012183
• Description: Brachypodium distachyon bdi-miR1122 mature miRNA
• Sequence: 64 - UAGAUACAUCCGUAUUUGGA - 83
• Evidence: not_experimental

References

1. PubMed ID: 19585143
   Conserved microRNAs and their targets in model grass species Brachypodium distachyon
   "Unver T, Budak H"
   "Planta (2009) 230:659-669