Stem-loop sequence bdi-MIR444a

Accession

MI0011558 (change log)

Previous IDs

bdi-MIR444

Description

Brachypodium distachyon miR444a stem-loop

Gene family

MIPF0000402; MIR444

Literature search

1 open access papers mention bdi-MIR444a
(3 sentences)

Stem-loop

   cac   uc   -  a            c        g   a   c ug    -   a 
5'    gcg  cga cu gaggcagcaacu cauaacuu cgg aag u  uugg aug u
      |||  ||| || |||||||||||| |||||||| ||| ||| |  |||| ||| g
3'    cgu  guu ga cuccgucguuga guauugaa gcc uuu a  aacc uac a
   ---   -c   c  a            c        -   a   u gu    g   c 

Confidence

Annotation confidence: not enough data

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Database links

• miRBase Tracker:MI0011558

Mature sequence bdi-miR444a

• Accession: MIMAT0012173
• Previous IDs: bdi-miR444
• Sequence: 90 - uugcugccucaagcuugcugc - 110
• Evidence: experimental; qRT-PCR [1], Illumina [2]

References

1. PMID:19585143 "Conserved microRNAs and their targets in model grass species Brachypodium distachyon" Unver T, Budak H Planta. 230:659-669(2009).
2. PMID:24367943 "Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon" Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ Genome Biol. 14:R145(2013).