Stem-loop sequence bta-mir-2284h

Accession

MI0011497 (change log)

Description

Bos taurus miR-2284h stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

13 open access papers mention bta-mir-2284h
(32 sentences)

Stem-loop

        cc            c      -c    a 
5' guugg  caaaaguucguu ggguuu  cugu u
   |||||  |||||||||||| ||||||  |||| g
3' caacc  guuuucgaguaa cccaaa  ggca u
        -a            c      aa    g 

Deep sequencing

48432 reads, 162 reads per million, 71 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr5: 118691017-118691083 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-2284h

• bta-mir-2285o-5: chr5: 118691013-118691088 [-]
• bta-mir-2284h: chr5: 118691017-118691083 [+]

Database links

• EntrezGene:MIR2284H
• miRBase Tracker:MI0011497

Mature sequence bta-miR-2284h-5p

• Accession: MIMAT0012019
• Previous IDs: bta-miR-2284h
• Sequence: 6 - cccaaaaguucguucggguuu - 26
• Deep sequencing: 48426 reads, 71 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2284h-5p

Mature sequence bta-miR-2284h-3p

• Accession: MIMAT0012020
• Previous IDs: bta-miR-2284h*
• Sequence: 45 - accccaaugagcuuuugacc - 64
• Deep sequencing: 6 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2284h-3p

References

1. PMID:19633723 "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection" Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ PLoS One. 4:e6349(2009).