Stem-loop sequence bta-mir-320b

Accession

MI0011472 (change log)

Description

Bos taurus miR-320b stem-loop

Literature search

8 open access papers mention bta-mir-320b
(18 sentences)

Stem-loop

        --auc    g     -  - ag     ccu  g 
5' agagc     accg cccuc ca c  agcuu   gg c
   |||||     |||| ||||| || |  |||||   ||  
3' ucuug     uggu gggag gu g  ucgag   uc c
        gcucc    -     a  u gg     -au  c 

Deep sequencing

9325 reads, 35.8 reads per million, 67 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr4: 96742431-96742502 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR320B
• miRBase Tracker:MI0011472

Mature sequence bta-miR-320b

• Accession: MIMAT0011991
• Sequence: 43 - agcuggguugagaggguggu - 62
• Deep sequencing: 9323 reads, 69 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-320b

References

1. PMID:19633723 "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection" Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ PLoS One. 4:e6349(2009).