Stem-loop sequence bta-mir-2404-1

Accession

MI0011446 (change log)

Description

Bos taurus miR-2404-1 stem-loop

Gene family

MIPF0000776; mir-2404

Literature search

3 open access papers mention bta-mir-2404-1
(3 sentences)

Stem-loop

            ca gguaucu   uu      uu 
5' auugcacug  u       gca  cagcag  u
   |||||||||  |       |||  ||||||  g
3' uagcgugac  a       ugu  gucguc  u
            ag --aaacu   cg      cu 

Deep sequencing

128 reads, 0 reads per million, 22 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Btau_5.0.1; GCA_000003205.6)	Overlapping transcripts
chr17: 6182519-6182583 [-]	sense ENSBTAT00000060063 ; SNORA8-201; exon 1 ENSBTAT00000059955 ; SNORA8-201; exon 1 ENSBTAT00000018468 ; FAM160A1-201; intron 4
chr29: 1066990-1067054 [+]	sense ENSBTAT00000060063 ; SNORA8-201; exon 1 ENSBTAT00000059955 ; SNORA8-201; exon 1 ENSBTAT00000018468 ; FAM160A1-201; intron 4

Database links

• EntrezGene:MIR2404-1
• miRBase Tracker:MI0011446

Mature sequence bta-miR-2404

• Accession: MIMAT0011961
• Sequence: 2 - uugcacugcaugguaucugc - 21
• Deep sequencing: 252 reads, 20 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2404

References

1. PMID:19633723 "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection" Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ PLoS One. 4:e6349(2009).