miRBase entry: bta-mir-2387

Stem-loop bta-mir-2387


Accession
MI0011427
Description
Bos taurus bta-mir-2387 precursor miRNA
Gene family
MIPF0001986; mir-2387

Literature search
2 open access papers mention bta-mir-2387
(2 sentences)

Sequence

198 reads, 21 reads per million, 28 experiments
agcguggagggccUGGAAGGCCUGGCUUUGCAGCGuggacuggacccugcagacccggccuuggcaagcccuuccgcu
((((.(((((((.((.((((((.((.(((((((.((.......)).))))))))).))))))..)).)))))))))))

Structure
    u       c  -G      U  C       C  gg 
agcg ggagggc UG  AAGGCC GG UUUGCAG Gu  a
|||| ||||||| ||  |||||| || ||||||| ||  c
ucgc cuucccg ac  uuccgg cc agacguc ca  u
    -       a  gg      c  -       c  gg 


Annotation confidence Not enough data
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Genome context
chr25: 33609132-33609209 [-]

Database links

Mature bta-miR-2387

Accession MIMAT0011939
Description Bos taurus bta-miR-2387 mature miRNA
Sequence 14 - UGGAAGGCCUGGCUUUGCAGCG - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19633723
    Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
    PLoS One (2009) 4:e6349