Stem-loop sequence bta-mir-2284p

Accession

MI0011378 (change log)

Description

Bos taurus miR-2284p stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

13 open access papers mention bta-mir-2284p
(32 sentences)

Stem-loop

   u         u            g  a     aauaa 
5'  ggguuggcu gaaaguuuguuc gg uuuuc     u
    ||||||||| |||||||||||| || |||||     a
3'  cucgaccgg uuuuuaaacaag cc aaaag     g
   a         u            a  a     cauuc 

Deep sequencing

126 reads, 0 reads per million, 34 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr19: 63733926-63734002 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR2284P
• RNAcentral:URS000075A0F5_9913
• miRBase Tracker:MI0011378

Mature sequence bta-miR-2284p

• Accession: MIMAT0011885
• Sequence: 11 - ugaaaguuuguucgggauuuu - 31
• Deep sequencing: 119 reads, 30 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2284p

References

1. PMID:19633723 "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection" Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ PLoS One. 4:e6349(2009).