Stem-loop sequence bta-mir-2284j

Accession

MI0011328 (change log)

Description

Bos taurus miR-2284j stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

14 open access papers mention bta-mir-2284j
(35 sentences)

Stem-loop

        -ug       a    c   ca    -   caa 
5' guugg   ggccgaa aguu guu  gguu uuc   g
   |||||   ||||||| |||| |||  |||| |||   u
3' uaacc   ccgguuu ucaa cag  ccaa aag   u
        cga       g    a   ac    u   aca 

Deep sequencing

61778 reads, 404 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr15: 32231535-32231609 [-]
• Overlapping transcripts:

  antisense

  ENSBTAT00000022788 ; GRIK4-201; intron 3

Clustered miRNAs

< 10kb from bta-mir-2284j

• bta-mir-2312: chr15: 32231536-32231608 [+]
• bta-mir-2284j: chr15: 32231535-32231609 [-]

Database links

• EntrezGene:MIR2284J
• miRBase Tracker:MI0011328

Mature sequence bta-miR-2284j

• Accession: MIMAT0011827
• Sequence: 12 - gaaaaguucguucagguuuu - 31
• Deep sequencing: 61778 reads, 77 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2284j

References

1. PMID:19633723 "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection" Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ PLoS One. 4:e6349(2009).