miRBase entry: zma-MIR2275a

Stem-loop zma-MIR2275a


Accession
MI0011278
Description
Zea mays zma-MIR2275a precursor miRNA
Gene family
MIPF0000797; MIR2275

Literature search
10 open access papers mention zma-MIR2275a
(16 sentences)

Sequence

22 reads, 1336 reads per million, 4 experiments
gucaggcacugaaagugAGAGUUGGAGGAAAGCAAACCggcuggguaucggauucagcaacggagggugcugccggucggUUUGUUUUCCUCCAAUAUCUCAccuucagucgauagucugau
(((((((((((((.((((((((((((((((((((((((((((((..........(((((.(....).))))))))))))))))))))))))))))).)))))).)))))).....)))))))

Structure
       -----      a      -                        guaucggauu     a g 
gucaggc     acugaa gugAGA GUUGGAGGAAAGCAAACCggcugg          cagca c g
|||||||     |||||| |||||| ||||||||||||||||||||||||          ||||| |  
uagucug     ugacuu cACUCU UAACCUCCUUUUGUUUggcuggcc          gucgu g a
       auagc      c      A                        ----------     g g 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
The mature product from the 5' arm of the hairpin dominates over the 3' arm, but the conservation signature with rice suggests that the 3' arm may be functional [1].

Genome context
chr4: 31733907-31734028 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from zma-MIR2275a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR2275a-5p

Accession MIMAT0011767
Description Zea mays zma-miR2275a-5p mature miRNA
Sequence 18 - AGAGUUGGAGGAAAGCAAACC - 38
Evidence experimental
454 [1]
Database links

Mature zma-miR2275a-3p

Accession MIMAT0011768
Description Zea mays zma-miR2275a-3p mature miRNA
Sequence 81 - UUUGUUUUCCUCCAAUAUCUCA - 102
Evidence experimental
454 [1]

References

  1. PubMed ID: 19584097
    Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
    "Genome Res (2009) 19:1429-1440