Stem-loop zma-MIR2118f

Accession

MI0011276

Description

Zea mays zma-MIR2118f precursor miRNA

Gene family

MIPF0000745; MIR2118

Literature search

11 open access papers mention zma-MIR2118f
(13 sentences)

Sequence

1 reads, 9 reads per million, 1 experiments

uaagagcagugggcaugggaacauaggggaaagccaaacuuucuuuaccuguacaacuaaggguggagaacuggagauuaguuuaguguUUCCCAAUGCCUUCCAUGCCUAuuguucuua
((((((((((((((((((((.(((.((((((.((.(((((((((((((((..........)))))))))).........))))).)).)))))).)))..))))))))))))))))))))

Structure

                    -a   a      a  c     ---------          guac 
uaagagcagugggcauggga  cau ggggaa gc aaacu         uucuuuaccu    a
||||||||||||||||||||  ||| |||||| || |||||         ||||||||||     
auucuuguuAUCCGUACCUU  GUA CCCUUu ug uuuga         aagagguggg    a
                    CC   A      g  a     uuagagguc          aauc 

Annotation confidence Not enough data

Genome context

chr10: 118740280-118740399 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR2118f

Mature zma-miR2118f

• Accession: MIMAT0011765
• Description: Zea mays zma-miR2118f mature miRNA
• Sequence: 90 - UUCCCAAUGCCUUCCAUGCCUA - 111
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440