Stem-loop zma-MIR2118b

Accession

MI0011272

Description

Zea mays zma-MIR2118b precursor miRNA

Gene family

MIPF0000745; MIR2118

Literature search

12 open access papers mention zma-MIR2118b
(15 sentences)

Sequence

27 reads, 186 reads per million, 3 experiments

uaagagcagugggaaugggaacauggaggaaagcccauccuguugguuuccuccuccagaaaccgagguggaagcuugguucgguguUUCCCGAUGCCUCCCAUUCCUAuuguucuua
((((((((((((((((((((.(((.(.((((((((...((....(((((((.((((........)))).))))))).))...))).)))))).)))..))))))))))))))))))))

Structure

                    -a   g a     -   cau  uguu       u    cag 
uaagagcagugggaauggga  cau g ggaaa gcc   cc    gguuucc ccuc   a
||||||||||||||||||||  ||| | ||||| |||   ||    ||||||| ||||    
auucuuguuAUCCUUACCCU  GUA C CCUUu ugg   gg    ucgaagg ggag   a
                    CC   G -     g   cuu  ---u       u    cca 

Annotation confidence Not enough data

Genome context

chr2: 51342905-51343022 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR2118b

Mature zma-miR2118b

• Accession: MIMAT0011761
• Description: Zea mays zma-miR2118b mature miRNA
• Sequence: 88 - UUCCCGAUGCCUCCCAUUCCUA - 109
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440