miRBase entry: osa-MIR2118g

Stem-loop osa-MIR2118g


Accession
MI0011257
Description
Oryza sativa osa-MIR2118g precursor miRNA
Gene family
MIPF0000745; MIR2118

Literature search
28 open access papers mention osa-MIR2118g
(163 sentences)

Sequence

16 reads, 1 reads per million, 2 experiments
gugaacuugggaagaggaagacagagggucuaagagcuguaggaaugggaacauggaggaaagugcaagcuccauguuuguggagacuuggcuugcaacuUUCCUAAUGCCUCCCAUUCCUAuuguucuuaggugcuccuuccucuuccuuuggucucac
(((((((.((((((((((((...(((.((((((((((.((((((((((((.(((..(((((((((((((((((((....)))))......)))))).)))))))).)))..)))))))))))).)))))))))).)))))))))))))))..))).))))

Structure
    -   -u            aca   g          u            -a   gg        -      ------     g 
guga acu  gggaagaggaag   gag gucuaagagc guaggaauggga  cau  aggaaagu gcaagc      uccau u
|||| |||  ||||||||||||   ||| |||||||||| ||||||||||||  |||  |||||||| ||||||      |||||  
cacu ugg  uccuucuccuuc   cuc uggauucuug uAUCCUUACCCU  GUA  UCCUUuca cguucg      aggug u
    c   uu            ---   g          u            CC   -A        a      guucag     u 


Annotation confidence Not enough data
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Genome context
Chr4: 21650301-21650460 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from osa-MIR2118g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR2118g

Accession MIMAT0011746
Description Oryza sativa osa-miR2118g mature miRNA
Sequence 101 - UUCCUAAUGCCUCCCAUUCCUA - 122
Evidence experimental
454 [1]

References

  1. PubMed ID: 19584097
    Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
    "Genome Res (2009) 19:1429-1440