miRBase entry: osa-MIR2118e

Stem-loop osa-MIR2118e


Accession
MI0011255
Description
Oryza sativa osa-MIR2118e precursor miRNA
Gene family
MIPF0000745; MIR2118

Literature search
29 open access papers mention osa-MIR2118e
(167 sentences)

Sequence

20 reads, 0 reads per million, 2 experiments
agugagucaggaagaggaagaaaagagagucuaagagcagcaggcaugggaacauggaggaaaaaacauauauaguuuucuuccccucuaaaguuagagguugaaauuugcuguguguuuUUCCCAAUGCCUCCCAUGCCUAcaguucuuaggcacuccuuccacuuccuguuggcu
(((.((.(((((((.(((((....(((.((((((((((.(.((((((((((.(((.(.(((((((.(((((((((.((((....((((((....))))))..)))).))).)))))))))))))).)))..)))))))))).).)))))))))).)))))))).))))))))).)))

Structure
   g  u       a     aaaa   a          a c          -a   g a       a      -   u    uucc      a 
agu ag caggaag ggaag    gag gucuaagagc g aggcauggga  cau g ggaaaaa cauaua uag uuuc    ccucua a
||| || ||||||| |||||    ||| |||||||||| | ||||||||||  ||| | ||||||| |||||| ||| ||||    ||||||  
ucg uu guccuuc ccuuc    cuc cggauucuug c UCCGUACCCU  GUA C CCUUuuu gugugu guu aaag    ggagau g
   g  -       a     ----   a          a A          CC   A -       -      c   u    --uu      u 


Annotation confidence Not enough data
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Genome context
Chr4: 21647428-21647604 [-]
Clustered miRNAs
13 other miRNAs are < 10 kb from osa-MIR2118e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR2118e

Accession MIMAT0011744
Description Oryza sativa osa-miR2118e mature miRNA
Sequence 121 - UUCCCAAUGCCUCCCAUGCCUA - 142
Evidence experimental
454 [1]

References

  1. PubMed ID: 19584097
    Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
    "Genome Res (2009) 19:1429-1440