miRBase entry: osa-MIR2118d

Stem-loop osa-MIR2118d


Accession
MI0011254
Description
Oryza sativa osa-MIR2118d precursor miRNA
Gene family
MIPF0000745; MIR2118

Literature search
29 open access papers mention osa-MIR2118d
(169 sentences)

Sequence

3 reads, 0 reads per million, 2 experiments
guggaucaggaagaggaagaaaagagggucugagagcggugggcaugggaacauggaggaaagcccaaacucuucuucgccucuagaacuaggggcugagauuugguuuccuuguuUUCCUGAUGCCUCCCAUGCCUAuuguucucagaugcuccuuccucuuccuuuugguucgc
(((((((((((((((((((....(((.(((((((((((((((((((((((.(((..((((((((..(((((..((((.(((((((....))))))).))))...)))))....)))))))).)))..))))))))))))))))))))))).))))))))))))))...))))))))

Structure
        ---           aaaa   g                       -a   gg        --cc     -cu    c       g 
guggauca   ggaagaggaag    gag gucugagagcggugggcauggga  cau  aggaaagc    aaacu   ucuu gccucua a
||||||||   |||||||||||    ||| |||||||||||||||||||||||  |||  ||||||||    |||||   |||| |||||||  
cgcuuggu   ccuucuccuuc    cuc uagacucuuguuAUCCGUACCCU  GUA  UCCUUuug    uuugg   agag cggggau a
        uuu           ----   g                       CC   -G        uucc     uuu    u       c 


Annotation confidence Not enough data
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Genome context
Chr4: 21647689-21647864 [-]
Clustered miRNAs
13 other miRNAs are < 10 kb from osa-MIR2118d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR2118d

Accession MIMAT0011743
Description Oryza sativa osa-miR2118d mature miRNA
Sequence 117 - UUCCUGAUGCCUCCCAUGCCUA - 138
Evidence experimental
454 [1]

References

  1. PubMed ID: 19584097
    Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
    "Genome Res (2009) 19:1429-1440